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TrioCaller (view source)

Revision as of 10:40, 5 April 2013

4 bytes added ,  10:40, 5 April 2013
→‎Initial set of variant calls
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   bin/samtools mpileup -Iuf ref/human_g1k_v37_chr20.fa bams/SAMPLE*bam | bcftools view -bvcg - > result/chr20.mpileup.bcf
+
   bin/samtools mpileup -Iuf ref/human_g1k_v37_chr20.fa bams/SAMPLE*bam | bin/bcftools view -bvcg - > result/chr20.mpileup.bcf
    
   bin/bcftools view result/chr20.mpileup.bcf  > result/chr20.mpileup.vcf
 
   bin/bcftools view result/chr20.mpileup.bcf  > result/chr20.mpileup.vcf
Weich
533

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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/6985"

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