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* A VCF file [[http://www.1000genomes.org/node/101 VCF specs]]. It can contain variant information for more individuals than in the ped file.
* A VCF file [[http://www.1000genomes.org/node/101 VCF specs]]. It can contain variant information for more individuals than in the ped file.
** Note: In the VCF file either PL or GL has to be provided, and only the PL (or GL) field is used in the calling.
== Output ==
== Output ==
