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* Example 4: using --minTotalDepth 1000 to filter sites that have a total reads less than 1000. This option will filter the entire site.
* Example 4: using --minTotalDepth 1000 to filter sites that have a total reads less than 1000. This option will filter the entire site.
triodenovo --ped trio.ped --in_vcf input.vcf --out denovo.vcf --minTotalDepth 1000
triodenovo --ped trio.ped --in_vcf input.vcf --out denovo.vcf --minTotalDepth 1000
* Example 5: using --mixed_vcf_records when not all records have the same FORMAT. If NOT all FORMAT columns are the same, it will report error if this option is not provided.
triodenovo --ped trio.ped --in_vcf input.vcf --out denovo.vcf --mixed_vcf_records
== Input files ==
== Input files ==
