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Triodenovo (view source)

Revision as of 18:19, 20 June 2016

261 bytes removed ,  18:19, 20 June 2016
→‎Usage
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* Example 4: using --minTotalDepth 1000 to filter sites that have a total reads less than 1000. This option will filter the entire site.  
 
* Example 4: using --minTotalDepth 1000 to filter sites that have a total reads less than 1000. This option will filter the entire site.  
 
  triodenovo --ped trio.ped --in_vcf input.vcf --out denovo.vcf --minTotalDepth 1000
 
  triodenovo --ped trio.ped --in_vcf input.vcf --out denovo.vcf --minTotalDepth 1000
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* Example 5: using --mixed_vcf_records when not all records have the same FORMAT. If NOT all FORMAT columns are the same, it will report error if this option is not provided. 
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triodenovo --ped trio.ped --in_vcf input.vcf --out denovo.vcf --mixed_vcf_records
      
== Input files ==
 
== Input files ==
Bingshan
480

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