1,120
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchTutorial: EMMAX GotCloud STOM: Lecture 8 (view source)
Revision as of 01:14, 7 January 2014
, 01:14, 7 January 2014→Visualizing Zoom Plot =
$S5/epacts/bin/epacts anno --in ~/out/snps/beagle/chr7/chr7.filtered.PASS.beagled.vcf.gz --out ~/out/snps/chr7.filtered.PASS.beagled.anno.vcf.gz --ref $S5/examples/chr7Ref/hs37d5.chr7.fa
$S5/epacts/bin/epacts anno --in ~/out/snps/beagle/chr7/chr7.filtered.PASS.beagled.vcf.gz --out ~/out/snps/chr7.filtered.PASS.beagled.anno.vcf.gz --ref $S5/examples/chr7Ref/hs37d5.chr7.fa
=== Visualizing Zoom Plot ====
=== Visualizing Zoom Plot ===
* Use ENCODE GM12878 cell type to diplsy variants in the locusZoom-like plot
* Use ENCODE GM12878 cell type to diplsy variants in the locusZoom-like plot
