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Jump to navigationJump to searchTutorial: EMMAX GotCloud STOM: Lecture 8 (view source)
Revision as of 01:33, 7 January 2014
, 01:33, 7 January 2014→Run Groupwise Test
cat ~/out/assoc/group.skat.o.epacts | cut -f 4,6,10,11
cat ~/out/assoc/group.skat.o.epacts | cut -f 4,6,10,11
$S5/epacts/bin/epacts group --ped $S5/examples/index/chr7.CFTR.ped --vcf ~/out/snps/chr7.filtered.PASS.beagled.anno.vcf.gz --out ~/out/assoc/group.VT --groupf ~/out/snps/chr7.filtered.PASS.beagled.anno.grp --test VT --run 2
$S5/epacts/bin/epacts group --ped $S5/examples/index/chr7.CFTR.ped --vcf ~/out/snps/chr7.filtered.PASS.beagled.anno.vcf.gz --out ~/out/assoc/group.VT --groupf ~/out/snps/chr7.filtered.PASS.beagled.anno.grp --test VT --run 2
* Run Variable Threshold test
* Run Variable Threshold test
