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, 11:28, 28 February 2013
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| Run the variant calling pipeline: | | Run the variant calling pipeline: |
− | $GCHOME/gotcloud snpcall --conf [[GBR60vc.conf]] --outdir $GCOUT --numjobs 2 | + | $GCHOME/gotcloud snpcall --conf [[GBR60vc.conf]] --outdir $GCOUT --numjobs 2 --region 20:42900000-43200000 |
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− | Upon successful completion of the variant calling pipeline, you will see the following message: | + | Upon successful completion of the variant calling pipeline (about 3-4 minutes), you will see the following message: |
| Commands finished in nnn secs with no errors reported | | Commands finished in nnn secs with no errors reported |
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