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Jump to navigationJump to searchTutorial: Low Pass Sequence Analysis (view source)
Revision as of 10:21, 5 July 2018
, 10:21, 5 July 2018→Initial set of variant calls
Now run the Makefiles as gotcloud suggests and continue with the workshop while gotCloud executes (it will take 5-10 minutes):
Now run the Makefiles as gotcloud suggests and continue with the workshop while gotCloud executes (it will take 5-10 minutes):
> make -f snpcall/umake.Makefile &> snpcall.log &
> make -f snpcall/umake.snpcall.Makefile &> snpcall.log &
Note that, in this case we are using a single CPU to run the snp calling. If you have multiple CPUs you can run gotcloud in parallel using multiple CPUs by setting the parameter "-j".
Note that, in this case we are using a single CPU to run the snp calling. If you have multiple CPUs you can run gotcloud in parallel using multiple CPUs by setting the parameter "-j".
