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Jump to navigationJump to search→STEP 2: Run RareMetalWorker on Individual Studies
$yourPath/bin/raremetalworker --ped $yourLocalPath/rmw_tutorial/inputfiles/example2.ped --dat $yourLocalPath/rmw_tutorial/inputfiles/example2.dat --vcf
$yourPath/bin/raremetalworker --ped $yourLocalPath/rmw_tutorial/inputfiles/example2.ped --dat $yourLocalPath/rmw_tutorial/inputfiles/example2.dat --vcf
$yourLocalPath/rmw_tutorial/inputfiles/example2.vcf.gz --kinGeno --kinSave --traitName LDL --inverseNormal --makeResiduals --useCovariates --prefix example2
$yourLocalPath/rmw_tutorial/inputfiles/example2.vcf.gz --kinGeno --kinSave --traitName LDL --inverseNormal --makeResiduals --useCovariates --prefix example2
* After the two runs are finished, you will see the following output files under your current path:
example1.singlevar.score.txt
example1.singlevar.cov.txt
example2.singlevar.score.txt
example2.singlevar.cov.txt
==STEP 3: Run RareMETAL to do Meta Analysis==
==STEP 3: Run RareMETAL to do Meta Analysis==
