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Tutorial: RAREMETAL (view source)

Revision as of 19:23, 7 March 2013

6 bytes added ,  19:23, 7 March 2013
→‎STEP 2: Run RareMetalWorker on Individual Studies
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   $yourPath/bin/raremetalworker --ped $yourLocalPath/rmw_tutorial/inputfiles/example1.ped --dat $yourLocalPath/rmw_tutorial/inputfiles/example1.dat --vcf   
 
   $yourPath/bin/raremetalworker --ped $yourLocalPath/rmw_tutorial/inputfiles/example1.ped --dat $yourLocalPath/rmw_tutorial/inputfiles/example1.dat --vcf   
−
  $yourLocalPath/rmw_tutorial/inputfiles/example1.vcf.gz --kinGeno --kinSave --traitName LDL --inverseNormal --makeResiduals --useCovariates --prefix example1
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        $yourLocalPath/rmw_tutorial/inputfiles/example1.vcf.gz --kinGeno --kinSave --traitName LDL --inverseNormal --makeResiduals --useCovariates --prefix example1
    
==STEP 3: Run RareMETAL to do Meta Analysis==
 
==STEP 3: Run RareMETAL to do Meta Analysis==
Shuang Feng
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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/6700"

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