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, 19:36, 7 March 2013
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| $yourPath/bin/raremetalworker --ped $yourLocalPath/rmw_tutorial/inputfiles/example1.ped --dat $yourLocalPath/rmw_tutorial/inputfiles/example1.dat --vcf | | $yourPath/bin/raremetalworker --ped $yourLocalPath/rmw_tutorial/inputfiles/example1.ped --dat $yourLocalPath/rmw_tutorial/inputfiles/example1.dat --vcf |
| $yourLocalPath/rmw_tutorial/inputfiles/example1.vcf.gz --kinGeno --kinSave --traitName LDL --inverseNormal --makeResiduals --useCovariates | | $yourLocalPath/rmw_tutorial/inputfiles/example1.vcf.gz --kinGeno --kinSave --traitName LDL --inverseNormal --makeResiduals --useCovariates |
− | --prefix $yourLocalPath/rmw_tutorial/outputfiles/example1 | + | --prefix $yourPath/rmw_tutorial/outputfiles/example1 |
| * The second sample can also be analyzed in the same fashion using the following command: | | * The second sample can also be analyzed in the same fashion using the following command: |
| $yourPath/bin/raremetalworker --ped $yourLocalPath/rmw_tutorial/inputfiles/example2.ped --dat $yourLocalPath/rmw_tutorial/inputfiles/example2.dat --vcf | | $yourPath/bin/raremetalworker --ped $yourLocalPath/rmw_tutorial/inputfiles/example2.ped --dat $yourLocalPath/rmw_tutorial/inputfiles/example2.dat --vcf |
| $yourLocalPath/rmw_tutorial/inputfiles/example2.vcf.gz --kinGeno --kinSave --traitName LDL --inverseNormal --makeResiduals --useCovariates | | $yourLocalPath/rmw_tutorial/inputfiles/example2.vcf.gz --kinGeno --kinSave --traitName LDL --inverseNormal --makeResiduals --useCovariates |
− | --prefix $yourLocalPath/rmw_tutorial/outputfiles/example2 | + | --prefix $yourPath/rmw_tutorial/outputfiles/example2 |
| * After the two runs are finished, you will see the following output files under your current path: | | * After the two runs are finished, you will see the following output files under your current path: |
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