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Tutorial: RAREMETAL (view source)

343 bytes added , 19:35, 14 August 2013

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$yourpath/raremetal_tutorial/raremetalworker/output/example1.QT1

$yourpath/raremetal_tutorial/raremetalworker/output/example1.QT2

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Then prepare the raremetalworker results for meta-analysis using the following command:

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bgzip yourprefix.example1.QT1.singlevar.score.txt

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tabix -c "#" -s 1 -b 2 -e 2 yourprefix.example1.QT1.singlevar.score.txt.gz

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bgzip yourprefix.example1.QT1.singlevar.cov.txt

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tabix -c "#" -s 1 -b 2 -e 2 yourprefix.example1.QT1.singlevar.cov.txt.gz

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* First, we perform single variant and four type of gene-level meta-analysis all at once, using the following command line:

cd raremetal

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