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Jump to navigationJump to search→STEP 3: Run RAREMETAL for Meta-Analysis
tabix -c "#" -s 1 -b 2 -e 2 yourprefix.example1.QT1.singlevar.cov.txt.gz
tabix -c "#" -s 1 -b 2 -e 2 yourprefix.example1.QT1.singlevar.cov.txt.gz
* First, we perform single variant and four type of gene-level meta-analysis all at once, using the following command line:
* Now, we are ready for meta-analysis. To perform single variant and four type of gene-level meta-analysis all at once, use the following command line:
cd raremetal
cd raremetal
$yourRAREMTALpath/bin/raremetal --studyName studyname.list --groupFile group.file --SKAT --burden --MB --VT
$yourRAREMTALpath/bin/raremetal --studyName studyname.list --groupFile group.file --SKAT --burden --MB --VT
