Changes

UMAKE (view source)

63 bytes added , 22:11, 19 December 2011

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* First, modify <code>UMAKE_ROOT, INPUT_ROOT, OUTPUT_ROOT</code> parameters accordingly.

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* Second, perform SNP calling procedure using the following command

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* Second, perform SNP calling procedure using the following command (you need to run all commands under <code>EXAMPLE_HOME</code>)

perl $(UMAKE_HOME)/scripts/umake.pl --snpcall

* Third, run BEAGLE genotype refinement using the

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