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Revision as of 22:31, 23 November 2014
, 22:31, 23 November 2014→Example output from vcf-summary
cat ${OUT}/vcfs/chr22/chr22.filtered.sites.vcf.summary
cat ${OUT}/vcfs/chr22/chr22.filtered.sites.vcf.summary
[[File:filterSum.png]]
[[File:filterSumNew.png|700px]]
The example above is obtained from the results of [[GotCloud]] within a very small (1Mb) region in chr22 across ~60 1000 Genomes samples.
The example above is obtained from the results of [[GotCloud]] within a very small (1Mb) region in chr22 across ~60 1000 Genomes samples.
== Rows of vcf-summary output has three sections ==
== Rows of vcf-summary output consist of three sections ==
As shown in the example figure above, typical vcf-summary output primarily consists of the following three sections.
As shown in the example figure above, typical vcf-summary output primarily consists of the following three sections.
