Changes

= Introduction =

= Introduction =

'''VICES''' is a program that jointly estimates the proportion of contaminating DNA in samples genotyped on arrays and which other samples in the study it came from.

'''VICES''' is a program that jointly estimates the proportion of contaminating DNA in samples genotyped on arrays and which other samples in the study the contaminating DNA came from.

= Download =

= Download =

  ~/vices/build/vices -r vices.test.report.list.txt -s vices.test.report.iids.txt -o vices.test.report.contam.txt

  ~/vices/build/vices -r vices.test.report.list.txt -s vices.test.report.iids.txt -o vices.test.report.contam.txt

Expected Output _:

'''Expected Output''' in vices.test.report.contam.txt:

  Recipient_ID    Estimated_contamination Sources

  Recipient_ID    Estimated_contamination Sources

  iid_01  0.0107758      AF:0.00351165; Donor_iid_02:0.00726419

  iid_01  0.0107758      AF:0.00351165; Donor_iid_02:0.00726419