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, 13:49, 12 April 2019
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| '''Download Sample Files''' [[File:vices_test.zip|vices_test.zip]] | | '''Download Sample Files''' [[File:vices_test.zip|vices_test.zip]] |
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− | Basic Command: | + | '''Basic Command''' from within the directory with the example files: |
− | _ | + | ~/vices/build/vices -r vices.test.report.list.txt -s vices.test.report.iids.txt -o vices.test.report.contam.txt |
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| Expected Output _: | | Expected Output _: |
− | _ | + | Recipient_ID Estimated_contamination Sources |
| + | iid_01 0.0107758 AF:0.00351165; Donor_iid_02:0.00726419 |
| + | iid_02 0.0371312 Donor_iid_01:0.0187088; Donor_iid_03:0.0184223 |
| + | iid_03 0.0791742 Donor_iid_01:0.0236221; Donor_iid_02:0.0165325; Donor_iid_08:0.0390197 |
| + | iid_04 0.0158945 AF:0.0158945 |
| + | iid_05 0.0535897 AF:0.025121; Donor_iid_04:0.0284687 |
| + | iid_06 0.0740575 AF:0.0346833; Donor_iid_04:0.0117261; Donor_iid_10:0.0276482 |
| + | iid_07 0.00551559 AF:0.00551559 |
| + | iid_08 -0.00673222 AF:-0.00673222 |
| + | iid_09 0.000255342 AF:0.000255342 |
| + | iid_10 9.90153e-05 AF:9.90153e-05 |
| + | iid_11 -0.00138426 AF:-0.00138426 |
| + | iid_12 -0.00588946 AF:-0.00588946 |
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| = Citation = | | = Citation = |