From Genome Analysis Wiki
Jump to navigationJump to search
376 bytes added
, 16:36, 20 May 2014
Line 97: |
Line 97: |
| | | |
| This is implemented in [http://genome.sph.umich.edu/wiki/Vt#Normalization vt]. | | This is implemented in [http://genome.sph.umich.edu/wiki/Vt#Normalization vt]. |
| + | |
| + | = Why you should use vt's implementation of normalization = |
| + | |
| + | |
| + | |
| + | {| class="wikitable" |
| + | |- |
| + | ! scope="col"| Dataset |
| + | ! scope="col"| bcftools |
| + | ! scope="col"| gatk |
| + | ! scope="col"| vt |
| + | ! scope="col"| comments |
| + | |- |
| + | | #normalized |
| + | | - |
| + | | 18794 |
| + | | 18849 |
| + | | - |
| + | |- |
| + | | #normalized after bcftools |
| + | | - |
| + | | - |
| + | | - |
| + | | - |
| + | |- |
| + | | #normalized after gatk |
| + | | - |
| + | | - |
| + | | 57 |
| + | | - |
| + | |- |
| + | | #normalized after vt |
| + | | - |
| + | | 0 |
| + | | - |
| + | | - |
| + | |- |
| | | |
| = Maintained by = | | = Maintained by = |
| | | |
| This page is maintained by [mailto:atks@umich.edu Adrian]. | | This page is maintained by [mailto:atks@umich.edu Adrian]. |