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218 bytes added
, 16:57, 20 May 2014
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| | no variants processed by vt were further normalized. | | | no variants processed by vt were further normalized. |
| |} | | |} |
| + | |
| + | Commands used are: |
| + | *bcftools norm -f ref.fa in.vcf -O z > out.vcf.gz |
| + | *java -jar GenomeAnalysisTK.jar -T LeftAlignAndTrimVariants -R ref.fa --variant in.vcf.gz -o out.vcf.gz |
| + | *vt normalize -r ref.vcf.gz -o out.vcf.gz |
| | | |
| = Maintained by = | | = Maintained by = |
| | | |
| This page is maintained by [mailto:atks@umich.edu Adrian]. | | This page is maintained by [mailto:atks@umich.edu Adrian]. |