1,102
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→How to observe that a variant is not left aligned?
We define an indel to be left aligned when the variant can not be shifted to the left any further while ensuring that the indel represented is consistent and that no alleles are represented with an empty string (empty allele). The orange representation is not left aligned while the blue representation is.
We define an indel to be left aligned when the variant can not be shifted to the left any further while ensuring that the indel represented is consistent and that no alleles are represented with an empty string (empty allele). The orange representation is not left aligned while the blue representation is.
=== How to observe that a variant is not left aligned? ===
=== How to observe that a variant is not left aligned or parsimonious on the right side? ===
If the ends of each allele is the same nucleotide, it is not left aligned.
If the ends of each allele is the same nucleotide, it is not left aligned.
