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, 18:33, 5 September 2014
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| : else, align strictly on 5' end and count transitions and transversions. | | : else, align strictly on 5' end and count transitions and transversions. |
| : b. If all overlapping nucleotides do not match, assign SNP if shorter allele is of length 1 and MNP if not. | | : b. If all overlapping nucleotides do not match, assign SNP if shorter allele is of length 1 and MNP if not. |
| + | : else assign CLUMPED |
| ;4. If all alleles are the same length, assign MNP to the entire variant. | | ;4. If all alleles are the same length, assign MNP to the entire variant. |
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