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, 02:10, 20 September 2010
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| 2. Input gene file should be a plain text file generated by [http://genome.ucsc.edu/ ucsc genome browser]. A sample pathway of generating an input gene file is | | 2. Input gene file should be a plain text file generated by [http://genome.ucsc.edu/ ucsc genome browser]. A sample pathway of generating an input gene file is |
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− | Go to http://genome.ucsc.edu/ ►► Click "table" ►► Specify the fields required (clade: mammal, genome:human etc.) ►► get output gene file | + | Go to http://genome.ucsc.edu/ ►► Click "table" ►► Specify the fields required (clade: mammal, genome:human etc.) ►► In "track" filed, select "UCSC gene" ►► get output gene file |
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− | 1. A detailed instruction on using the table browser could be found at [http://genome.ucsc.edu/cgi-bin/hgTables?command=start#Help genome.ucsc.edu/cgi-bin/hgTables]. | + | 1. Gene file used should be of [[GenePred table format]] |
− | 2. One can specify the region to be the whole genome or any particular gene position (e.g. chr21:33031597-33041570). | + | 2. A detailed instruction on using the table browser could be found at [http://genome.ucsc.edu/cgi-bin/hgTables?command=start#Help genome.ucsc.edu/cgi-bin/hgTables]. |
| + | 3. One can specify the region to be the whole genome or any particular gene position (e.g. chr21:33031597-33041570). |
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| Here is an example of input gene file headlines: | | Here is an example of input gene file headlines: |