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, 02:28, 13 December 2010
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| string symbol; "Standard gene symbol" | | string symbol; "Standard gene symbol" |
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− | Note: the 11th field is a mandatory field for running vcfCodingSnps. In the genelists provided with the package, this field gives the standard gene symbols such as "APOE", "LDL-R" etc. If a genelist downloaded by you own that does not contain such a field, you can simply make the 11th field equal to the first field which is the gene name in a specific track by a syntax like | + | Note: the 11th field is a mandatory field for running vcfCodingSnps. In the genelists provided with the package, this field gives the standard gene symbols such as "APOE", "LDL-R" etc. |
| + | If a genelist downloaded by you own that does not contain such a field, you can simply make the 11th field equal to the first field which is the gene name in a specific track by a syntax like |
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| awk `{FS="\t"; print $0"\t"$1 }` yourGenelist > yourNewGenelist | | awk `{FS="\t"; print $0"\t"$1 }` yourGenelist > yourNewGenelist |