Changes

=== Reference FASTA format file ===

=== Reference FASTA format file ===

Reference file should be in FASTA format (typically [reference].fa). verifyBamID uses libcsg-format for efficiently indexing the [reference].fa file, creating [reference]-bs.umfa file in the directory where the FASTA file exists. If your FASTA file is not previously indexed, please make sure that the directory is writable. Otherwise, it will report errors when creating the index. The reference FASTA file must be compatible to the reference file in the original BAM file. For NCBI build 37 sequences, an example fasta file could be found at ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/human_g1k_v37.fasta.gz

Reference file should be in FASTA format (typically [reference].fa). verifyBamID uses libcsg-format for efficiently indexing the [reference].fa file, creating [reference]-bs.umfa file in the directory where the FASTA file exists. If your FASTA file is not previously indexed, please make sure that the directory is writable. Otherwise, it will report errors when creating the index. The reference FASTA file must be compatible to the reference file in the original BAM file. For NCBI build 37 sequences, an example fasta file could be found at ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/human_g1k_v37.fasta.gz (Note that the file size is very large - 874MB)

=== PLINK-format binary input genotype file ===

=== PLINK-format binary input genotype file ===