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No change in size ,  08:34, 18 May 2012
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# SEQ_SM : Sample ID of the sequenced sample. Obtained from @RG header / SM tag in the BAM file
 
# SEQ_SM : Sample ID of the sequenced sample. Obtained from @RG header / SM tag in the BAM file
 
# RG : ReadGroup ID of sequenced lane. For [outPrefix].selfSM and [outPrefix].bestSM, these values are "ALL"
 
# RG : ReadGroup ID of sequenced lane. For [outPrefix].selfSM and [outPrefix].bestSM, these values are "ALL"
* CHIP_ID : Sample ID compared to in the genotype file. For [outPrefix].selfRG and [outPrefix].selfSM, these values should be identical to [SEQ_SM] or "NA" if the genotype of sequenced samples are unavailable. For [outPrefix].bestRG and [outPrefix].bestSM, these values should be the ID of best-matching sample among the genotype files compared to.
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# CHIP_ID : Sample ID compared to in the genotype file. For [outPrefix].selfRG and [outPrefix].selfSM, these values should be identical to [SEQ_SM] or "NA" if the genotype of sequenced samples are unavailable. For [outPrefix].bestRG and [outPrefix].bestSM, these values should be the ID of best-matching sample among the genotype files compared to.
 
# # SNPs : # of SNPs passing the criteria from the VCF file
 
# # SNPs : # of SNPs passing the criteria from the VCF file
 
# # READS : Total # of reads loaded from the BAM file
 
# # READS : Total # of reads loaded from the BAM file

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