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== What's new ==
== What's new ==
The new release of verifyBamID have undergone major change since the last version (as of 2011 April). Here are the highlights
(2012/05/23)
* Fixed a bug of incorrect per-readgroup output (Thanks to Matthew Flickinger)
* '''(IMPORTANT)''' Add an option to remove either side of overlapping fragment. This option is turned on by default, and can be turned off usig --ignoreOverlapPair. If your sequence data has very short insert size, adding this option may increase the sensitivity of estimated contamination.
(2012/05/18) The new release of verifyBamID have undergone major change since the last version (as of 2011 April). Here are the highlights
* The genotype / allele frequency file is now based on VCF format rather than PLINK format.
* The genotype / allele frequency file is now based on VCF format rather than PLINK format.
* The reference sequence information is no longer required
* The reference sequence information is no longer required
