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== Download verifyBamID ==
== Download verifyBamID ==
To get a copy go to the [http://www.sph.umich.edu/csg/kang/verifyBamID/download VerifyBamID Download] download page.
To get a copy of verifyBamId, go to: https://github.com/statgen/verifyBamID/releases
Select the latest release and download in one of 3 ways:
# Binary expected to run in Ubuntu x64 platform. In other platforms, please download the source distribution and build it.
#* verifyBamID.#.#.#.gz
#* You will need to run "gunzip" on the .gz file
# Souce Code including libStatGen (uses a fixed version of libStatGen)
#* verifyBamIDLibStatGen.#.#.#.tgz
#* Run "tar xvf" on this file. Cd into the resulting directory & type make.
# Source Code without libStatGen (allows alternative/newer versions of libStatGen)
#* Source code (tar.gz) or Source code (zip)
#* You will need to download libStatGen separately if you do not already have it.
To get a copy of older releases go to the [http://www.sph.umich.edu/csg/kang/verifyBamID/download VerifyBamID Download] download page.
== Join in verifyBamID mailing list ==
== Join in verifyBamID mailing list ==
== What's new ==
== What's new ==
(2014/02/13)
* Put verifyBamID in github.
* Added PhoneHome/Version Checking to VerifyBamID
(2012/06/20)
(2012/06/20)
== Build verifyBamID ==
== Build verifyBamID ==
The binary download of verifyBamID is available. You may use the version in Ubuntu 64-bit platform. To build verifyBamID, download the statgen library and run the following series of commands
The binary download of verifyBamID is available. You may use that version in Ubuntu 64-bit platform.
tar xzvf verifyBamID.20120620.tar.gz
cd verifyBamID
If you download the source that includes libStatGen:
tar xvf verifyBamIDLibStatGen.#.#.#.tgz
cd verifyBamID_#.#.#
make
make
./bin/verifyBamID
Executable: verifyBamID/bin/verifyBamID
If you download the source without libStatGen:
tar xvf verifyBamID-#.#.#.tar.gz
cd verifyBamID-1.1.0
make cloneLib (if ../libStatGen does not exist)
make
Executable: ./bin/verifyBamID
Note that '''make cloneLib''' command will create a directory ../libStatGen under your verifyBamID directory, and '''make''' will create binary of verifyBamID under verifyBamID/bin/
If you have a different version of libStatGen at that path, then skip the cloneLib step. If the libStatGen you want to use is at a different location then update verifyBamID's Makefile.inc. Replace: LIB_PATH_VERIFY_BAM_ID ?= $(LIB_PATH_GENERAL) with
LIB_PATH_VERIFY_BAM_ID = /path/to/libStatGen
verifyBamID is designed to be reasonably portable.
verifyBamID is designed to be reasonably portable.
However, since development occurs only on Ubuntu 9.10 x86 and x64 platforms, and later, there are likely other portability issues.
However, since development occurs only on Ubuntu (9.10-13.10) x86 and x64 platforms, and later, there are likely other portability issues.
== Basic Usage ==
== Basic Usage ==
