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, 04:20, 14 June 2017
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| # CHIP_RA : Estimated reference bias parameter Pr(refBase|HOMALT) (when --chip-refBias or --chip-full is used) | | # CHIP_RA : Estimated reference bias parameter Pr(refBase|HOMALT) (when --chip-refBias or --chip-full is used) |
| # DPREF : Depth (Coverage) of HomRef site (based on the genotypes of (SELF_SM/BEST_SM), passing mapQ, baseQual, maxDepth thresholds. | | # DPREF : Depth (Coverage) of HomRef site (based on the genotypes of (SELF_SM/BEST_SM), passing mapQ, baseQual, maxDepth thresholds. |
− | # RDPHET : DPHET/DPREF, Relative depth at Heterozygous site. | + | # RDPHET : DPHET/DPREF, Relative depth to HomRef site at Heterozygous site. |
− | # RDPALT : DPHET/DPREF, Relative depth at HomAlt site. | + | # RDPALT : DPHET/DPREF, Relative depth to HomRef site at HomAlt site. |
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| === A guideline to interpret output files === | | === A guideline to interpret output files === |