Changes

VerifyBamID (view source)

No change in size , 10:40, 2 August 2013

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* --free-none : Do not perform sequence-only method to estimate parameters

* --free-mix : (default) Estimate contamination using sequence-only method with Brent's single dimensional optimization.

−

* --free-refBias : Estimate the ~~refernece~~ bias parameters using sequence-only method with Simplex method

+

* --free-refBias : Estimate the reference bias parameters using sequence-only method with Simplex method

* --free-full : Estimate both reference bias parameters and the contamination parameters using sequence-only method

* --chip-none : Do not perform sequence+array method to estimate parameters

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