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== Download verifyIDintensity ==
== Download verifyIDintensity ==
* [[File:VerifyIDintensity.tgz]]
* [https://github.com/gjun/verifyIDintensity GitHub repository]
== Build verifyID intensity ==
== Build verifyID intensity ==
To build verifyIDintensity, run the following series of commands. You need [http://www.boost.org/ boost library] and [http://tclap.sourceforge.net/ tclap].
To build verifyIDintensity, run the following series of commands. You need [http://www.boost.org/ boost library] and [http://tclap.sourceforge.net/ tclap].
tar xzvf verifyIDintensity.tgz
make
$ tar xzvf verifyIDintensity.tgz
$ make
== Basic Usage ==
== Basic Usage ==
-h, --help
-h, --help
Displays usage information and exits.
Displays usage information and exits.
== Reference ==
Please cite the following paper:
G. Jun, M. Flickinger, K. N. Hetrick, Kurt, J. M. Romm, K. F. Doheny, G. Abecasis, M. Boehnke,and H. M. Kang, ''Detecting and Estimating Contamination of Human DNA Samples in Sequencing and Array-Based Genotype Data'', American journal of human genetics doi:10.1016/j.ajhg.2012.09.004 (volume 91 issue 5 pp.839 - 848)
== For sequence data ==
[[VerifyBamID]] software can estimate sample contamination from aligned sequence reads and population minor allele frequency
