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, 11:27, 16 January 2012
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| == Output == | | == Output == |
| | | |
| + | atks@fantasia:~/data/got2d$ vmatch got2d.wg4x.1511samples.73976indels.gatk.chr20.sites.vcf got2d.wg4x.1514samples.71994indels.samtools.chr20.sites.vcf -w 10 -d |
| + | VCF file A : got2d.wg4x.1511samples.73976indels.gatk.chr20.sites.vcf |
| + | VCF file B : got2d.wg4x.1514samples.71994indels.samtools.chr20.sites.vcf |
| + | Genome file : /net/fantasia/home/atks/ref/genome/human.g1k.v37.fa |
| + | Window Size : 10 |
| + | SRSA : 8578 |
| + | SRSAN : 34522 |
| + | SRDA : 2363 |
| + | SRDNA : 888 |
| + | DRDA : 2322 |
| + | DRDNA : 439 |
| + | #A Records : 73976 |
| + | #B Records : 71994 |
| + | Match %tage for VCF file A |
| + | Level 1 (SRSA, SRSAN) : 58.2621 |
| + | Level 2 (SRSA, SRSAN, SRDA, SRDNA) : 62.6568 |
| + | Level 3 (SRSA, SRSAN, SRDA, SRDNA, DRDA, DRDNA): 66.3891 |
| + | Match %tage for VCF file B |
| + | Level 1 (SRSA, SRSAN) : 59.8661 |
| + | Level 2 (SRSA, SRSAN, SRDA, SRDNA) : 64.3818 |
| + | Level 3 (SRSA, SRSAN, SRDA, SRDNA, DRDA, DRDNA): 68.2168 |
| + | Matched variants written to match.txt |
| + | Match logs written to match.log |
| + | |
| + | atks@fantasia:~/data/got2d$ head match.txt |
| + | id1 id2 match_type extended_no_bases normalized |
| + | A4 B1 SRSAN 0 1 |
| + | A5 B2 SRSAN 0 1 |
| + | A6 B4 SRSA 0 0 |
| + | A7 B5 SRSAN 0 1 |
| + | A8 B6 SRSA 0 0 |
| + | A9 B7 SRDA 0 1 |
| + | A10 B8 SRSAN 0 1 |
| + | A11 B9 SRSAN 0 1 |
| + | A12 B10 SRSAN 0 1 |
| | | |
| == Description == | | == Description == |