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Vmatch (view source)

Revision as of 11:33, 16 January 2012

120 bytes removed ,  11:33, 16 January 2012
→‎Output
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==  Output ==
 
==  Output ==
   −
    atks@fantasia:~/data/got2d$ vmatch got2d.wg4x.1511samples.73976indels.gatk.chr20.sites.vcf  got2d.wg4x.1514samples.71994indels.samtools.chr20.sites.vcf -w 10 -d   
+
  user@host:~$ vmatch gatk.vcf  samtools.vcf -w 10 -d   
 +
   
 
     VCF file A  : got2d.wg4x.1511samples.73976indels.gatk.chr20.sites.vcf
 
     VCF file A  : got2d.wg4x.1511samples.73976indels.gatk.chr20.sites.vcf
 
     VCF file B  : got2d.wg4x.1514samples.71994indels.samtools.chr20.sites.vcf
 
     VCF file B  : got2d.wg4x.1514samples.71994indels.samtools.chr20.sites.vcf
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     Match logs written to match.log
 
     Match logs written to match.log
 
      
 
      
−
     atks@fantasia:~/data/got2d$ head match.txt  
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 +
     user@host:~$ head match.txt  
 +
 
 
     id1 id2 match_type  extended_no_bases  normalized
 
     id1 id2 match_type  extended_no_bases  normalized
 
     A4  B1  SRSAN  0  1
 
     A4  B1  SRSAN  0  1
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