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90 bytes added ,  15:33, 16 January 2012
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== Command Line Options ==
 
== Command Line Options ==
   −
     vcf-file      VCF file
+
     vcf-file-1       VCF file (can be gzipped or bgzipped)
 +
    vcf-file-2      VCF file (can be gzipped or bgzipped)
 
     genome-file    Memory Mapped Sequence file
 
     genome-file    Memory Mapped Sequence file
 
     w              window size to detect overlaps between variants
 
     w              window size to detect overlaps between variants
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