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, 12:06, 27 May 2015
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| === FAQ === | | === FAQ === |
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− | #vt cannot retrieve sequences from my reference sequence file ==== | + | #vt cannot retrieve sequences from my reference sequence file. |
− | | + | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium. |
− | It is common to use reference files based on UCSC browser and from the Genome Reference Consortium.
| + | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the |
− | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1
| + | FASTA files from these 2 sources. <br> |
− | respectively in the FASTA files from these 2 sources. Just use the appropriate FASTA file that was used
| + | Just use the appropriate FASTA file that was used to generate your VCF file in originally. |
− | to generate your VCF file in originally.
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| == Resource Bundle == | | == Resource Bundle == |