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479 bytes added
, 14:53, 14 February 2016
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| profile_vntrs v0.5 | | profile_vntrs v0.5 |
| | | |
− | no VNTRs 5660874 | + | no VNTRs 5660874 #number of VNTRs in vntrs.sites.bcf |
− | no low complexity 2686460 (47.46%) | + | no low complexity 2686460 (47.46%) #number of VNTRs in low complexity region determined by MDUST |
− | no coding 17911 (0.32%) | + | no coding 17911 (0.32%) #number of VNTRs in coding regions determined by GENCODE v7 |
− | no redundant 1312209 (23.18%) <br> | + | no redundant 1312209 (23.18%) #number of VNTRs involved in overlapping with one another<br> |
− | trf_lobstr (1638516) | + | trf_lobstr (1638516) #TRF based reference set used in lobSTR, motif lengths 1 to 6. |
| A-B 3269285 | | A-B 3269285 |
| A-B~ 1666185 | | A-B~ 1666185 |
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| B-A~ 710075 | | B-A~ 710075 |
| B-A 205246 <br> | | B-A 205246 <br> |
− | trf_repeatseq (1624553) | + | trf_repeatseq (1624553) #TRF based reference set used in repeatseq, motif lengths 1 to 6. |
| A-B 3291652 | | A-B 3291652 |
| A-B~ 1650190 | | A-B~ 1650190 |
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| B-A~ 703948 | | B-A~ 703948 |
| B-A 203767 <br> | | B-A 203767 <br> |
− | trf_vntrseek (230306) | + | trf_vntrseek (230306) #TRF based reference set used in vntrseek, motif lengths 7 to 2000. |
| A-B 5384453 | | A-B 5384453 |
| A-B~ 271302 | | A-B~ 271302 |
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| B-A~ 92496 | | B-A~ 92496 |
| B-A 132837 <br> | | B-A 132837 <br> |
− | codis+ (15) | + | codis+ (15) #CODIS STRs + 2 STRs from PROMEGA |
| A-B 5660794 | | A-B 5660794 |
| A-B~ 79 | | A-B~ 79 |