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864 bytes added
, 15:40, 12 January 2017
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| Removes INFO tags from a VCF file | | Removes INFO tags from a VCF file |
| | | |
| + | <div class=" mw-collapsible mw-collapsed"> |
| + | #removes the INFO tags OLD_VARIANT, ENTROPY, PSCORE and COMP |
| + | vt rminfo exact.del.bcf -t OLD_VARIANT,ENTROPY,PSCORE,COMP -o rm.bcf |
| + | |
| + | <div class="mw-collapsible-content"> |
| + | usage : vt rminfo [options] <in.vcf> |
| + | |
| + | options : -o output VCF file [-] |
| + | -q do not print options and summary [false] |
| + | -t list of info tags to be removed [] |
| + | -I file containing list of intervals [] |
| + | -i intervals [] |
| + | -? displays help |
| + | </div> |
| + | </div> |
| + | |
| + | === Remove overlap === |
| + | |
| + | description : Removes overlapping variants in a VCF file by tagging such variants with the FILTER flag overlap. |
| + | |
| + | usage : vt remove_overlap [options] <in.vcf> |
| + | |
| + | options : -o output VCF file [-] |
| + | -I file containing list of intervals [] |
| + | -i intervals [] |
| + | -? displays help |
| + | |
| <div class=" mw-collapsible mw-collapsed"> | | <div class=" mw-collapsible mw-collapsed"> |
| #removes the INFO tags OLD_VARIANT, ENTROPY, PSCORE and COMP | | #removes the INFO tags OLD_VARIANT, ENTROPY, PSCORE and COMP |