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105 bytes removed
, 22:52, 7 November 2017
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| = Pedigree File = | | = Pedigree File = |
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− | vt understands an augmented version introduced by [hmkang@umich.edu Hyun] of the PED described by [http://zzz.bwh.harvard.edu/plink/data.shtml#ped plink]. | + | vt understands an augmented version introduced by [mailto:hmkang@umich.edu Hyun] of the PED described by [http://zzz.bwh.harvard.edu/plink/data.shtml#ped plink]. |
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| + | |
| The pedigree file format is as follows with the following mandatory fields: | | The pedigree file format is as follows with the following mandatory fields: |
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| Phenotype | | Phenotype |
| |ID of this family <br> | | |ID of this family <br> |
− | ID of this individual <br> | + | ID(s) of this individual (comma separated) <br> |
| ID of the father <br> | | ID of the father <br> |
| ID of the mother <br> | | ID of the mother <br> |
− | Sex of the individual. <br> | + | Sex of the individual<br> |
− | Phenotype. | + | Phenotype |
| |[A-Za-z_]+<br> | | |[A-Za-z_]+<br> |
− | [A-Za-z_]+ <br> | + | [A-Za-z_]+(,[A-Za-z_]+)* <br> |
| [A-Za-z_]+ <br> | | [A-Za-z_]+ <br> |
| [A-Za-z_]+<br> | | [A-Za-z_]+<br> |
− | 1 = male, 2 = female and other = alternative<br> | + | 1=male, 2=female, other=alternative, male, female<br> |
| [A-Za-z_]+ | | [A-Za-z_]+ |
| |} | | |} |
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− | Family ID
| + | Examples: |
− | Individual ID
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− | Paternal ID
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− | Maternal ID
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− | Sex (1=male; 2=female; other=unknown)
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− | Phenotype
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− | ceu NA12878 NA12891 NA12892 female | + | ceu NA12878 NA12891 NA12892 female |
| yri NA19240 NA19239 NA19238 female | | yri NA19240 NA19239 NA19238 female |
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| + | ceu NA12878 NA12891 NA12892 2 |
| + | yri NA19240 NA19239 NA19238 2 |
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− | ceu NA12878,NA12878A NA12891 NA12892 female | + | ceu NA12878,NA12878A NA12891 NA12892 female |
− | yri NA19240 NA19239 NA19238 female | + | yri NA19240 NA19239 NA19238 female |
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− | ceu NA12878,NA12878A NA12891 NA12892 0
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− | yri NA19240 NA19239 NA19238 0
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− | | |
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| = Resource Bundle = | | = Resource Bundle = |