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#concatenate chr1.mills.bcf and chr2.mills.bcf
#concatenate chr1.mills.bcf and chr2.mills.bcf
vt concat chr1.mills.bcf chr2.mills.bcf -o mills.bcf
vt cat chr1.mills.bcf chr2.mills.bcf -o mills.bcf
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usage : vt concat [options] <in1.vcf>...
usage : vt cat [options] <in1.vcf>...
options : -s print site information only without genotypes [false]
options : -s print site information only without genotypes [false]
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=== Validate ===
Checks the following properties of a VCF file:
#order
#reference sequence consistency
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#validates lobstr.vcf
vt validate lobstr.bcf
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usage : vt validate [options] <in.vcf>
options : -q do not print invalid records [false]
-I file containing list of intervals []
-i intervals []
-r reference sequence fasta file []
-? displays help
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validate v0.5
= VCF Inspection and Evaluation =
= VCF Inspection and Evaluation =
