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options : -o output VCF file [-]
options : -o output VCF file [-]
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=== Paste ===
Concatenate VCF files. Assumes individuals are in the same order and files share the same header.
Pastes VCF files like the unix paste functions.
Input requirements and assumptions:
1. Same variants are represented in the same order for each file (required)
2. Genotype fields are the same for corresponding records (required)
3. Sample names are different in all the files (warning will be given if not)
4. Headers are the same for all the files (assumption, not checked, will fail if output is BCF)
Outputs:
1. INFO fields output will be that of the first file
2. Genotype fields are the same for corresponding records
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#paste chr1.mills.bcf and chr2.mills.bcf
vt paste chr1.mills.bcf chr2.mills.bcf -o mills.bcf
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usage : vt paste [options] <in1.vcf>...
options : -L file containing list of input VCF files
-o output VCF file [-]
-p print options and summary []
-? displays help
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