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Vt (view source)

Revision as of 22:53, 4 March 2015

2 bytes added ,  22:53, 4 March 2015
→‎Normalization
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   usage : vt normalize [options] <in.vcf>
 
   usage : vt normalize [options] <in.vcf>
   −
  options : -o  output VCF file [-]
+
  options : -o  output VCF file [-]
−
            -I file containing list of intervals []
+
            -d  debug [false]
−
            -w  window size for local sorting of variants [10000]
+
            -q do not print options and summary [false]
−
            -i  intervals []
+
            -w  window size for local sorting of variants [10000]
−
            -r  reference sequence fasta file []
+
            -I  file containing list of intervals []
−
            --  ignores the rest of the labeled arguments following this flag
+
            -i  intervals []
−
            -h displays help
+
            -r  reference sequence fasta file []
 +
            -? displays help
 
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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/12968"

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