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modified to reflect the change in alleles. All other genotype fields are removed. The -s option will retain the fields and decompose fields of counts R and A accordingingly.
modified to reflect the change in alleles. All other genotype fields are removed. The -s option will retain the fields and decompose fields of counts R and A accordingingly.
Decomposition is a lossy operation and one should be aware of the issues in handling variants resulting from such operations. The original purpose of this tool is to allow for allelic comparisons between call sets.
Decomposition and combining variants is a complex operation where the correctness is dependent on [[https://github.com/tfarrah tfarrah@github]]:
*whether the observed variants are seen in the same sample,
*if same sample, whether they are homozygous or heterozygous,
*if both heterozygous, whether they are in the same haplotype or not (if known).
and one should be aware of the issues in handling variants resulting from such operations. <br>
The original purpose of this tool is to allow for allelic comparisons between call sets.
[[https://github.com/atks/vt/issues/16 example of a problem caused in combining separate variant records]]
[[https://github.com/atks/vt/issues/16 example of a problem caused in combining separate variant records]]
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