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94 bytes removed
, 13:37, 14 May 2015
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| === Paste === | | === Paste === |
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− | Concatenate VCF files. Assumes individuals are in the same order and files share the same header.
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| Pastes VCF files like the unix paste functions. | | Pastes VCF files like the unix paste functions. |
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| Input requirements and assumptions: | | Input requirements and assumptions: |
| 1. Same variants are represented in the same order for each file (required) | | 1. Same variants are represented in the same order for each file (required) |
− | 2. Genotype fields are the same for corresponding records (required) | + | 2. Genotype field order are the same for corresponding records (required) |
| 3. Sample names are different in all the files (warning will be given if not) | | 3. Sample names are different in all the files (warning will be given if not) |
| 4. Headers are the same for all the files (assumption, not checked, will fail if output is BCF) | | 4. Headers are the same for all the files (assumption, not checked, will fail if output is BCF) |
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| 1. INFO fields output will be that of the first file | | 1. INFO fields output will be that of the first file |
| 2. Genotype fields are the same for corresponding records | | 2. Genotype fields are the same for corresponding records |
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| <div class=" mw-collapsible mw-collapsed"> | | <div class=" mw-collapsible mw-collapsed"> |