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complete header. Simply provide a header file stub named as <vcf-file>.hdr and vt
complete header. Simply provide a header file stub named as <vcf-file>.hdr and vt
will automatically read it instead of the original header in <vcf-file>.
will automatically read it instead of the original header in <vcf-file>.
This mechanism is very safe to use if one is reading VCF or compressed VCF files.
However it is not meant for BCF files as the assumption for BCF files is that the
header is already well formed.
== General cases of Ploidy and Alleles ==
== General cases of Ploidy and Alleles ==
