From Genome Analysis Wiki
Jump to navigationJump to search
2,190 bytes added
, 12:07, 27 May 2015
Line 1,067: |
Line 1,067: |
| | | |
| === FAQ === | | === FAQ === |
| + | |
| + | #vt cannot retrieve sequences from my reference sequence file |
| + | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium. |
| + | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the |
| + | FASTA files from these 2 sources. <br> |
| + | Just use the appropriate FASTA file that was used to generate your VCF file in originally. |
| + | |
| + | #vt cannot retrieve sequences from my reference sequence file |
| + | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium. |
| + | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the |
| + | FASTA files from these 2 sources. <br> |
| + | Just use the appropriate FASTA file that was used to generate your VCF file in originally. |
| + | |
| + | #vt cannot retrieve sequences from my reference sequence file |
| + | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium. |
| + | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the |
| + | FASTA files from these 2 sources. <br> |
| + | Just use the appropriate FASTA file that was used to generate your VCF file in originally. |
| + | |
| + | #vt cannot retrieve sequences from my reference sequence file |
| + | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium. |
| + | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the |
| + | FASTA files from these 2 sources. <br> |
| + | Just use the appropriate FASTA file that was used to generate your VCF file in originally. |
| + | |
| + | #vt cannot retrieve sequences from my reference sequence file |
| + | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium. |
| + | For example, HG19 vs GrCH37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the |
| + | FASTA files from these 2 sources. <br> |
| + | Just use the appropriate FASTA file that was used to generate your VCF file in originally. |
| | | |
| #vt cannot retrieve sequences from my reference sequence file | | #vt cannot retrieve sequences from my reference sequence file |