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, 12:16, 27 May 2015
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− | === FAQ ===
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− | ====1. vt cannot retrieve sequences from my reference sequence file ====
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− | It is common to use reference files based on the UCSC browser's database and from the Genome Reference Consortium.
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− | For example, HG19 vs Grch37. The key difference is that chromosome 1 is represented as chr1 and 1 respectively in the
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− | FASTA files from these 2 sources. Just use the appropriate FASTA file that was used to generate your VCF file in originally.
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| == Resource Bundle == | | == Resource Bundle == |