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775 bytes added
, 14:27, 8 February 2016
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| 20 763837 . C T 50340.1 PASS AC=1;AN=2;OLD_CLUMPED=20:763837:CG/TGA GT 0|1 | | 20 763837 . C T 50340.1 PASS AC=1;AN=2;OLD_CLUMPED=20:763837:CG/TGA GT 0|1 |
| 20 763838 . G GA 50340.1 PASS AC=1;AN=2;OLD_CLUMPED=20:763837:CG/TGA GT 0|1 | | 20 763838 . G GA 50340.1 PASS AC=1;AN=2;OLD_CLUMPED=20:763837:CG/TGA GT 0|1 |
| + | |
| + | #decomposes biallelic clumped variant and write out to decomposed_blocksub.vcf |
| + | vt decompose_blocksub -p gatk.vcf -o decomposed_blocksub.vcf <br> |
| + | #before decomposition |
| + | #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT tumor normal |
| + | 1 159030 . TAACCTTTC TGACCTTTT 0.04 . AF=0.5 GT 0|0 1|1 <br> |
| + | #after decomposition |
| + | 1 159031 . A G 0.04 . AF=0.5;OLD_CLUMPED=1:159030:TAACCTTTC/TGACCTTTT GT:PS 0|0:159031 1|1:159030 |
| + | 1 159038 . C T 0.04 . AF=0.5;OLD_CLUMPED=1:159030:TAACCTTTC/TGACCTTTT GT:PS 0|0:159031 1|1:159030 |
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