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Requires a set of features AND an installed copy of SVMLight.
Requires a set of features AND an installed copy of SVMLight.
vt svm NA12878.bam -i NA12878.sites.vcf -o NA12878.svm.sites.vcf --pos positive.sites.vcf --neg negative.sites.vcf
vt filter NA12878.bam -i NA12878.sites.vcf -o NA12878.svm.sites.vcf --pos positive.sites.vcf --neg negative.sites.vcf
A filtering pipeline implemented in a make file is available here.
A filtering pipeline implemented in a make file is available here.
