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Views a VCF or BCF or VCF.GZ file. Eventually to support filters, subsetting of samples.
Views a VCF or BCF or VCF.GZ file.
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#views mills.bcf and outputs to standard out
#views mills.bcf and outputs to standard out
vt view mills.bcf
vt view mills.bcf
#views mills.bcf and locally sorts it in a 10000bp window and outputs to out.bcf
vt view -w 10000 mills.bcf
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usage : vt view [options] <in.vcf>
usage : vt view [options] <in.vcf>
options : -o output VCF/VCF.GZ/BCF file [-]
options : -o output VCF/VCF.GZ/BCF file [-]
-v variant type []
-w local sorting window size [0]
-p print options and summary []
-p print options and summary []
-I file containing list of intervals []
-I file containing list of intervals []
-i intervals []
-i intervals []
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