MaCH FAQ: Revision history

2 February 2017

• curprev 15:2215:22, 2 February 2017 Ppwhite talk contribs 12,923 bytes −3 →How do I get imputation quality estimates?
• curprev 15:2215:22, 2 February 2017 Ppwhite talk contribs 12,926 bytes −6 →How do I get imputation quality estimates?
• curprev 15:2115:21, 2 February 2017 Ppwhite talk contribs 12,932 bytes −3 →Install MaCH
• curprev 15:2115:21, 2 February 2017 Ppwhite talk contribs 12,935 bytes −3 →How do I get reference files for an region of interest?
• curprev 15:2015:20, 2 February 2017 Ppwhite talk contribs 12,938 bytes −3 →How do I interpret the imputation quality estimates?
• curprev 15:2015:20, 2 February 2017 Ppwhite talk contribs 12,941 bytes −3 →Where can I find HapMap III / 1000 Genomes reference files?
• curprev 15:2015:20, 2 February 2017 Ppwhite talk contribs 12,944 bytes −3 →Where can I find combined HapMap reference files?
• curprev 15:1915:19, 2 February 2017 Ppwhite talk contribs 12,947 bytes −3 →minimac

24 April 2012

• curprev 20:1320:13, 24 April 2012 Ylwtx talk contribs 12,950 bytes +12 →MaCH-Admix
• curprev 20:1220:12, 24 April 2012 Ylwtx talk contribs 12,938 bytes +20 →MaCH-Admix

27 March 2012

• curprev 19:5919:59, 27 March 2012 Ylwtx talk contribs 12,918 bytes −4 →MaCH-Admix
• curprev 19:5819:58, 27 March 2012 Ylwtx talk contribs 12,922 bytes −2 →MaCH-Admix

15 January 2012

• curprev 21:3821:38, 15 January 2012 Ylwtx talk contribs 12,924 bytes −2 →How do I get reference files for an region of interest?
• curprev 21:3821:38, 15 January 2012 Ylwtx talk contribs 12,926 bytes +344 →How do I get reference files for an region of interest?

13 January 2012

• curprev 21:3821:38, 13 January 2012 Ylwtx talk contribs 12,582 bytes +7 →MaCH-Admix
• curprev 21:3721:37, 13 January 2012 Ylwtx talk contribs 12,575 bytes +14 →MaCH-Admix
• curprev 21:3721:37, 13 January 2012 Ylwtx talk contribs 12,561 bytes +50 →MaCH-Admix
• curprev 21:3621:36, 13 January 2012 Ylwtx talk contribs 12,511 bytes +428 →minimac

29 November 2011

• curprev 20:5820:58, 29 November 2011 Ylwtx talk contribs 12,083 bytes +11 →minimac

17 November 2011

• curprev 12:2412:24, 17 November 2011 Ylwtx talk contribs 12,072 bytes +124 →How do I get reference files for an region of interest?
• curprev 12:2312:23, 17 November 2011 Ylwtx talk contribs 11,948 bytes +38 →How do I get reference files for an region of interest?

5 August 2011

• curprev 00:1500:15, 5 August 2011 Ylwtx talk contribs 11,910 bytes +2 →How do I get reference files for an region of interest?

30 July 2011

• curprev 01:2201:22, 30 July 2011 Ylwtx talk contribs 11,908 bytes −117 →Do I always have to sort the pedigree file by marker position?
• curprev 01:2101:21, 30 July 2011 Ylwtx talk contribs 12,025 bytes +166 →How do I get reference files for an region of interest?

6 June 2011

• curprev 16:0116:01, 6 June 2011 Ylwtx talk contribs 11,859 bytes +1,391 →minimac

16 February 2011

• curprev 00:3000:30, 16 February 2011 Ylwtx talk contribs 10,468 bytes −12 →How do I get imputation quality estimates?

15 January 2011

• curprev 16:5316:53, 15 January 2011 Ylwtx talk contribs 10,480 bytes 0 No edit summary
• curprev 16:5116:51, 15 January 2011 Ylwtx talk contribs 10,480 bytes +136 No edit summary

5 December 2010

• curprev 13:1813:18, 5 December 2010 Ylwtx talk contribs 10,344 bytes +99 →How do I get reference files for an region of interest?

29 November 2010

• curprev 12:2212:22, 29 November 2010 Ylwtx talk contribs 10,245 bytes +140 No edit summary
• curprev 01:1301:13, 29 November 2010 Ylwtx talk contribs 10,105 bytes +4 →Why and how to perform a 2-step imputation?
• curprev 01:1001:10, 29 November 2010 Ylwtx talk contribs 10,101 bytes +642 No edit summary
• curprev 01:0501:05, 29 November 2010 Ylwtx talk contribs 9,459 bytes −1 →Why and how to perform a 2-step imputation?
• curprev 01:0401:04, 29 November 2010 Ylwtx talk contribs 9,460 bytes +59 →Why and how to perform a 2-step imputation?

24 November 2010

• curprev 11:1711:17, 24 November 2010 Ylwtx talk contribs 9,401 bytes +5 →How do I get reference files for an region of interest?

19 November 2010

• curprev 20:3620:36, 19 November 2010 Ylwtx talk contribs 9,396 bytes +33 →How long does imputation take?

22 September 2010

• curprev 18:4318:43, 22 September 2010 Goncalo talk contribs 9,363 bytes −28 →How is AL1 defined? Which allele dosage is .dose/.mldose counting?
• curprev 18:4218:42, 22 September 2010 Goncalo talk contribs 9,391 bytes −23 →More questions?

8 August 2010

• curprev 09:1609:16, 8 August 2010 Ylwtx talk contribs 9,414 bytes +84 →undefined symbol: gzopen64

24 June 2010

• curprev 11:4711:47, 24 June 2010 Ylwtx talk contribs 9,330 bytes +24 →How do I interpret the imputation quality estimates?
• curprev 11:4711:47, 24 June 2010 Ylwtx talk contribs 9,306 bytes −33 →How do I interpret the imputation quality estimates?
• curprev 11:4411:44, 24 June 2010 Ylwtx talk contribs 9,339 bytes +993 →How do I get imputation quality estimates?
• curprev 11:2911:29, 24 June 2010 Ylwtx talk contribs 8,346 bytes +55 →How do I get imputation quality estimates?

23 June 2010

• curprev 19:0219:02, 23 June 2010 Ylwtx talk contribs 8,291 bytes +154 No edit summary

9 June 2010

• curprev 21:3521:35, 9 June 2010 Ylwtx talk contribs 8,137 bytes +146 No edit summary
• curprev 13:3513:35, 9 June 2010 Ylwtx talk contribs 7,991 bytes +88 →How long does imputation take?
• curprev 13:3413:34, 9 June 2010 Ylwtx talk contribs 7,903 bytes +153 →Why and how to perform a 2-step imputation?
• curprev 13:3213:32, 9 June 2010 Ylwtx talk contribs 7,750 bytes +112 →How long does imputation take?

4 June 2010

• curprev 10:2810:28, 4 June 2010 Goncalo talk contribs 7,638 bytes +7,638 Created page with '== Why and how to perform a 2-step imputation? == When one has a large number of individuals (>1000), we recommend a 2-step imputation to speed up. <br>    …'