Talk:GotCloud: Difference between revisions

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The main page is http://genome.sph.umich.edu/wiki/GotCloud .
The main page is http://genome.sph.umich.edu/wiki/GotCloud .


Setup instructions and documentation:
Pages that document or help with installation:
* http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
* http://genome.sph.umich.edu/wiki/GotCloud:_Binary_Releases
* http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
* http://genome.sph.umich.edu/wiki/GotCloud:_Source_Releases
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** http://genome.sph.umich.edu/wiki/StarCluster
** http://genome.sph.umich.edu/wiki/StarCluster


Documentation of steps in the GotCloud pipeline:
Pages that document steps in the GotCloud pipeline:
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
* http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Pipeline
** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines
** http://genome.sph.umich.edu/wiki/GotCloud:_Alignment_Sub-Pipelines
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* http://genome.sph.umich.edu/wiki/GotCloud:_Creating_a_New_Pipeline
* http://genome.sph.umich.edu/wiki/GotCloud:_Creating_a_New_Pipeline


Documentation of pieces of GotCloud:
Pages that document pieces of GotCloud:
* http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling
* http://genome.sph.umich.edu/wiki/PileupBasedVariantCalling
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
* http://genome.sph.umich.edu/wiki/GotCloud:_Filters
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* http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)
* http://genome.sph.umich.edu/wiki/GotCloud:_Genetic_Reference_and_Resource_Files (documentation and instructions)


Configuration:
Pages that explain configuration:
* http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>)
* http://genome.sph.umich.edu/wiki/Configure_GotCloud (mainly covers <code>BATCH_OPTS</code>)


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* http://genome.sph.umich.edu/wiki/Creating_an_AMI_on_EC2
* http://genome.sph.umich.edu/wiki/Creating_an_AMI_on_EC2


Other:
Other pages:
* http://genome.sph.umich.edu/wiki/GotCloud:_FAQs
* http://genome.sph.umich.edu/wiki/GotCloud:_FAQs
* http://genome.sph.umich.edu/wiki/GotCloud:_Versions documents old versions
* http://genome.sph.umich.edu/wiki/GotCloud:_Versions documents old versions

Revision as of 00:25, 8 January 2016

Organization of the GotCloud pages on this wiki

The main page is http://genome.sph.umich.edu/wiki/GotCloud .

Pages that document or help with installation:

Pages that document steps in the GotCloud pipeline:

Pages that document pieces of GotCloud:

Pages that explain configuration:

Tutorials:

Pages for developers:

Other pages:

Event-specific pages:

Pages of which some ought to be hidden, deleted, or heavily re-worked: